CIMCR Publications

Center for Integrated Microbiome and Chronobiology Research
Circadian Rhythm Research
Microbiome and Bioinformatics
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CIMCR GC/MSD ChemStation
CIMCR Research Faculty
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CIMCR Staff
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Center for Integrated Microbiome and Chronobiology Research
Circadian Rhythm Research
Microbiome and Bioinformatics
CIMCR Freezer Farm
CIMCR GC/MSD ChemStation
CIMCR Research Faculty
CIMCR Publications
CIMCR Staff
Research Collaborations
RUSH Center for Circadian Rhythms and Alcohol-Induced Tissue Damage
Our Repository
Conduct Research in Our Facilities
Consultation Services
Request Our Services
Training and Informational Events
Our Team
Circadian Rhythms
Alcohol Use Disorder
Contact Us

Recent Publications: February 2021 - Present

Faculty of CIMCR in bold/black

  • Singh S, Giron LB, Shaikh MW, Shankaran S, Engen PA, Bogin ZR, Bambi SA, Goldman AR, Azevedo JLLC, Orgaz L, de Pedro N, Gonzalez P, Giera M, Verhoeven A, Sanchez Lopez E, Pandrea I, Kannan T, Tanes CE, Bittinger K, Landay AL, Corley MJ, Keshavarzian A, Abdel-Mohsen M. Distinct intestinal microbiotal signatures linked to accelerated systemic and intestinal biological aging. Microbiome. 2024 Feb 22;12(1):31. doi: 10.1186/s40168-024-024-01758-4. PMID: 38383483

  • Voigt RM, Ouyang B, Keshavarzian A. Outdoor Nighttime Light Exposure (Light Pollution) is Associated with Alzheimer's Disease. medRxiv [Preprint]. 2024 Feb 15:2024.02.14.24302831. doi: 10.1101/2024.02.14.24302831. PMID: 38405987

  • Swanson GR, Garg K, Shaikh M, Keshavarzian A. Increased Intestinal Permeability and Decreased Resiliency of the Intestinal Barrier in Alcoholic Liver Disease. Clin Transl Gastroenterol. 2024 Feb 9. doi: 10.14309/ctg.0000000000000689. Online ahead of print. PMID: 38334953

  • Shi M, Ahmedin NJ, Zong X, Yilmaz ӦH, Bishehsari F, Cao Y. Alcohol Drinking Without Meals Is Associated with Risk of Gastrointestinal Cancers, Including Early-Onset Cases. Gastroenterology. 2023 Nov 15:S0016-5085(23)05233-2. doi: 10.1053/j.gastro.2023.11.012. Online ahead of print. PMID: 37977310

  • Adnan D, Trinh JQ, Sharma D, Alsayid M, Bishehsari F. Early-onset colon cancer shows a distinct intestinal microbiome and a host-microbe interaction. Cancer Prev Res (Phila). 2023 Nov 16. doi: 10.1158/1940-6207.CAPR-23-0091. Online ahead of print. PMID: 37967575

  • Singh S, Giron LB, Shaikh MW, Shankaran S, Engen PA, Bogin ZR, Bambi SA, Goldman AR, Azevedo JLLC, Orgaz L, de Pedro N, González P, Giera M, Verhoeven A, Sánchez-López E, Pandrea IV, Kannan T, Tanes CE, Bittinger K, Landay AL, Corley MJ, Keshavarzian A, Abdel-Mohsen M. Distinct Intestinal Microbial Signatures Linked to Accelerated Biological Aging in People with HIV. Res Sq. 2023 Oct 30:rs.3.rs-3492242. doi: 10.21203/rs.3.rs-3492242/v1. Preprint. PMID: 37961645

  • Wong AC, Devason AS, Umana IC, Cox TO, Dohnalová L, Litichevskiy L, Perla J, Lundgren P, Etwebi Z, Izzo LT, Kim J, Tetlak M, Descamps HC, Park SL, Wisser S, McKnight AD, Pardy RD, Kim J, Blank N, Patel S, Thum K, Mason S, Beltra JC, Michieletto MF, Ngiow SF, Miller BM, Liou MJ, Madhu B, Dmitrieva-Posocco O, Huber AS, Hewins P, Petucci C, Chu CP, Baraniecki-Zwil G, Giron LB, Baxter AE, Greenplate AR, Kearns C, Montone K, Litzky LA, Feldman M, Henao-Mejia J, Striepen B, Ramage H, Jurado KA, Wellen KE, O'Doherty U, Abdel-Mohsen M, Landay AL, Keshavarzian A, Henrich TJ, Deeks SG, Peluso MJ, Meyer NJ, Wherry EJ, Abramoff BA, Cherry S, Thaiss CA, Levy M. Serotonin reduction in post-acute sequelae of viral infection. Cell. 2023 Oct 26;186(22):4851-4867.e20. doi: 10.1016/j.cell.2023.09.013. Epub 2023 Oct 16. PMID: 37848036

  • Aboushaala K, Wong AYL, Barajas JN, Lim P, Al-Harthi L, Chee A, Forsyth CB, Oh CD, Toro SJ, Williams FMK, An HS, Samartzis D. The Human Microbiome and Its Role in Musculoskeletal Disorders. Genes (Basel). 2023 Oct 14;14(10):1937. doi: 10.3390/genes14101937. PMID: 37895286

  • Jo T, Kim J, Bice P, Huynh K, Wang T, Arnold M, Meikle PJ, Giles C, Kaddurah-Daouk R, Saykin AJ, Nho K; Alzheimer's Disease Metabolomics Consortium (ADMC); Alzheimer's Disease Neuroimaging Initiative (ADNI). Circular-SWAT for deep learning based diagnostic classification of Alzheimer's disease: application to metabolome data. EBioMedicine. 2023 Oct 6;97:104820. doi: 10.1016/j.ebiom.2023.104820. Online ahead of print. PMID: 37806288 Collaborators: Keshavarzian A, Voigt RM

  • Pantalone MR, Martin Almazan N, Lattanzio R, Taher C, De Fabritiis S, Valentinuzzi S, Bishehsari F, Mahdavinia M, Verginelli F, Rahbar A, Mariani-Costantini R, Söderberg-Naucler C. Human cytomegalovirus infection enhances 5‑lipoxygenase and cycloxygenase‑2 expression in colorectal cancer. Int J Oncol. 2023 Nov;63(5):116. doi: 10.3892/ijo.2023.5564. Epub 2023 Sep 1. PMID: 37654195

  • Sharma D, Wessel CR, Mahdavinia M, Preuss F, Bishehsari F. Reorganization of pancreas circadian transcriptome with aging. Aging (Albany NY). 2023 Aug 29;15(16):7909-7921. doi: 10.18632/aging.204929. Epub 2023 Aug 29. PMID: 37647013

  • Abdel-Haq R, Schlachetzki JCM, Boktor JC, Cantu-Jungles TM, Thron T, Zhang M, Bostick JW, Khazaei T, Chilakala S, Morais LH, Humphrey G, Keshavarzian A, Katz JE, Thomson M, Knight R, Gradinaru V, Hamaker BR, Glass CK, Mazmanian SK. Correction: A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice. Elife. 2023 Aug 31;12:e92367. doi: 10.7554/eLife.92367.PMID: 37650862

  • Post Z, Manfready RA, Keshavarzian A. Overview of the Gut-Brain Axis: From Gut to Brain and Back Again. Semin Neurol. 2023 Aug 10. doi: 10.1055/s-0043-1771464. Online ahead of print. PMID: 37562457

  • Bishehsari F, Drees M, Adnan D, Sharma D, Green S, Koshy J, Giron LB, Goldman A, Abdel-Mohsen M, Rasmussen HE, Miller GE, Keshavarzian A. Multi-omics approach to socioeconomic disparity in metabolic syndrome reveals roles of diet and microbiome. Proteomics. 2023 Oct;23(19):e2300023. doi: 10.1002/pmic.202300023. Epub 2023 Jul 31. PMID: 37525324

  • Nowicki C, Ray L, Engen P, Madrigano A, Witt T, Lad T, Cobreigh M, Mutly EA. Comparison of gut microbiome composition in colonic biopsies, endoscopically-collected and at-home-collected stool samples. Frony microbiol. 2023 Jun 1;14:1148097. doi: 10.3389/fmicb.2023.1148097. eCollection 2023. PMID: 37323911 Pubmed Link

  • Sharma D, Wessel CR, Mahdavinia M, Preuss F, Bishehsari F. Reorganization of Pancreas Circadian Transcriptome with Aging. bioRxiv. 2023 May 17.2023.05.17.541196. doi: 10.1101/2023.05.17.541196. Reprint. PMID: 37292612

  • Swanson GR, Schwartz BA, Joyce C, Keshavarzian A. (2023) Binge drinking alcohol and circadian misalignment in night shift nurses is associated with decreased resiliency to COVID-19 infection. alcohol: Clinical and Experimental Research, 47, 908-918. First published: 28 May 2023 https://doi.org/10.1111/acer.15052 Recognition Article of Interest, May 2023

  • Rodriguez CI, Keshavarzian A, Hamaker BR, Liu F, Lunken GR, Rasmussen H, Zhou H, Tap J, Swanson KS, Ukhanova M, Leclerc M, Gotteland M, Navarrete P, Kovatcheva-Datchary P, Dahl WJ, Martiny JBH. Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans.Sci Data. 2023 Jun 2;10(1):346. doi: 10.1038/s41597-023-02254-4.PMID: 37268699

  • Boodaghidizaji M, Jungles T, Chen T, Zhang B, Landay A, Keshavarzian A, Hamaker B, Ardekani A. Machine learning based gut microbiota pattern and response to fiber as a diagnostic tool for chronic inflammatory diseases. bioRxiv. 2023 Mar 29:2023.03.27.534466. doi: 10.1101/2023.03.27.534466. Preprint. PMID: 37034781

  • Swanson GR, Biglin M, Raff H, Chouhan V, Jochum S, Shaikh M, Francey L, Bishehsari F, Hogenesh J, Keshavarzian A.  Impact of Chronotherapy on 6-Mercaptopurine Metabolites in Inflammatory Bowel Disease: A Pilot Crossover Trial. Clinical and Translational Gastroenterology PMID:36730289 Feb 1, 2023 Pubmed Link

  • Hall D, Voigt-Zuwala RM, Cantu-Jungles TM, Hamaker B, Engen PA, Shaikh A, Raeisi S, Green SJ, Naqib A, Forsyth CB, Manfready R, Chen T, Ouyang B, Rasmussen HE, Sedghi S, Goetz CG, Keshavarzian A. An Open Label, Non-Randomized Study Assessing a Prebiotic Fiber Intervention in a Small Cohort of Parkinson’s Disease Participants". Nature Communications. PMID: 36801916 2023 Feb 18 Pubmed Link

  • Saini P, Adeniji O, Bordoloi D, Kinslow J, Martinson J, Parent D, Hong KY, Koshy J, Kulkarni A, Zilberstein N, Balk R, Moy J, Giron L, Tracy R, Keshavarzian A, Muthumani K, Landay A, Weiner D, Abdel-Mohsen M. Siglec-9 Restrains Antibody-dependent Natural Killer Cell Cytotoxicity Against SARS-CoV-2.  mBio. PMID:36728420 2023 Feb Pubmed Link

  • Boktor JC, Sharon G, Verhagen Metman LA, Hall DA, Engen PA, Zreloff Z, Hakim DJ, Bostick JW, Ousey J, Lange D, Humphrey G, Ackermann G, Carlin M, Knight R, Keshavarzian A, Mazmanian SK. Integrated Multi-Cohort Analysis of the Parkinson's Disease Gut Metagenome. Mov Disord. PMID:36691982 2023 Jan 24. Pubmed Link

  • Oxner M, Trang A, Mehta J, Forsyth CB, Swanson B, Keshavarzian A, Bhushan A. The Versatility and Diagnostic Potential of VOC Profiling for Noninfectious Diseases. BME Front. 2023;4:Article 0002. published 1.10.23 Link

  • Bardenhorst SK, Cereda E, Severgnini M, Barichella M, Pezzoli G, Keshavarzian A, Desideri A, Pietrucci D, Aho VTE, Scheperjans F, Hildebrand F, Weis S, Egert M, An Karch A, Vital M, Rübsamen N. Gut microbiota dysbiosis in Parkinson's disease - a systematic review and pooled analysis Eur J Neurol PMID:36593694 2023 Jan 2. Pubmed Link

  • Ko KC, Jochum SB, Wilson BM, Adra A, Patel N, Lee H, Wilber S, Shaikh M, Forsyth CB, Keshavarzian A, Swanson GR, D Sumner DR. Colon epithelial cell-specific Bmal1 deletion impairs bone formation in mice. Bone. 2023 Mar;168:116650. doi: 10.1016/j.bone.2022.116650. Epub PMID: 36584784 2022 Dec 28. Pubmed Link

  • Forsyth CB, Voigt RM, Swanson GR, Bishehsari F, Shaikh M, Zhang L, Engen P, Keshavarzian A. Alcohol use disorder as a potential risk factor for COVID-19 severity: A narrative review. Alcohol Clin Exp Res. PMID:36394508 2022 Nov 17. Pubmed Link

  • Abdel-Haq R, Schlachetzki JCM, Boktor JC, Cantu-Jungles TM, Thron T, Zhang M, Bostick JW, Khazaei T, Chilakala S, Morais LH, Humphrey G, Keshavarzian A, Katz JE, Thomson M, Knight R, Gradinaru V, Hamaker BR, Glass CK, Mazmanian SK. A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice. Elife. PMID:36346385 2022 Nov. Pubmed link

  • Mavrogeni ME, Asadpoor M, Henricks PAJ, Keshavarzian A, Folkerts G, Braber S. Direct Action of Non-Digestible Oligosaccharides against a Leaky Gut. Nutrients. PMID:36364961 2022 Nov 7 Pubmed Link

  • Jochum SB, Engen PA, Shaikh M, Naqib A, Wilber S, Raeisi S, MS, Zhang L, Song S, Sanzo G, Chouhan V, Ko F, Post Z, Tran L, Ramirez V, Green SJ, Khazaie K, Hayden DM, Brown MJ, Voigt RM, Forsyth CB, Keshavarzian A, Swanson GR. Colonic Epithelial Circadian Disruption Worsens Dextran Sulfate Sodium–Induced Colitis. Inflammatory Bowel Diseases, izac219, PMID:36287037 Published: 26 October 2022 Pubmed Link

  • Forsyth CB, Zhang L, Bhushan A, Swanson B, Mamede J, Shaikh M, Keshavarzian A. The SARS-CoV-2 S1 Spike Protein Promotes MAPK and NF-kB Activation and Inflammatory Cytokine Production In Human Lung and Intestinal Epithelial Cells. MDPI open access October 2022 Pubmed Link

  • Frausto DM. Engen PA, Naqib A, Jackson A, Tran L, Green S, Shaikh M, Forsyth CB, Keshavarzian A, Voigt RM. Impact of Alcohol-Induced Intestinal Microbiota Dysbiosis in a Rodent Model of Alzheimer’s Disease, Frontiers in Aging. Front. Aging. 15 August 2022 Sec. Aging, Metabolism and Redox Biology Pubmed Link

  • Yassine HN, Samieri C, Livingston G, Glass K, Wagner M, Tangney C, Plassman BL, Ikram MA, Voigt RM, Gu Y, O'Bryant S, Minihane AM, Craft S, Fink HA, Judd S, Andrieu S, Bowman GL, Richard E, Albensi B, Meyers E, Khosravian S, Solis M, Carrillo M, Snyder H, Grodstein F, Scarmeas N, Schneider LS. Nutrition state of science and dementia prevention: recommendations of the Nutrition for Dementia Prevention Working Group. Lancet Healthy Longev. PMID:35821792 2022 Jul 3. Pubmed Link

  • Giron LB, Peluso MJ, Ding J, Kenny G, Zilberstein NF, Koshy J, Hong KY, Rasmussen H, Miller GE, Bishehsari F, Balk RA, Moy JN, Hoh R, Lu S, Goldman AR, Tang HY, Yee BC, Chenna A, Winslow JW, Petropoulos CJ, Kelly JD, Wasse H, Martin JN, Liu Q, Keshavarzian A, Landay A, Deeks SG, Henrich TJ, Abdel-Mohsen M. Markers of fungal translocation are elevated during post-acute sequelae of SARS-CoV-2 and induce NF-κB signaling. JCI Insight. PMID:35727635 2022 Jun 21 Pubmed Link

  • Wang L, Pelgrim CE, Peralta Marzal LN, Korver S, Van Ark I, Leusink-Muis T, Van Helvoort A, Keshavarzian A, Kraneveld AD, Garssen J, Henricks PAJ, Folkerts G, Braber S. 1.Changes in intestinal homeostasis and immunity in a cigarette smoke- and LPS-induced murine model for COPD: the lung-gut axis. Am J Physiol Lung Cell Mol Physiol. 2022 Sep 1; 323(3): L266–L280.Published online PMID:35699290 2022 Jun 14 Pubmed Link

  • Trinh JQ, Bishehsari F. Could "Eating Behavior" be a novel lifestyle factor that modulates risk of gastrointestinal cancers? Hepatobiliary Surg Nutr. PMID: 3569340 2022 Jun. Pubmed Link

  • Jedel S, Beck T, Swanson G, Hood MM, Voigt RM, Gorenz A, Jakate S, Raeisi S, Hobfoll S, Keshavarzian A. Mindfulness Intervention Decreases Frequency and Severity of Flares in Inactive Ulcerative Colitis Patients: Results of a Phase II, Randomized, Placebo-Controlled Trial. Inflamm Bowel Dis. PMID:35661212 2022 Jun 4 Pubmed Link

  • Voigt RM, Zalta AK, Raeisi S, Zhang L, Brown JM, Forsyth CB, Boley RA, Held P, Pollack MH, Keshavarzian A. Abnormal intestinal milieu in post-traumatic stress disorder is not impacted by treatment that improves symptoms. Am J Physiol Gastrointest Liver Physiol. 2022 Aug 1;323(2):G61-G70. Epub PMID:35638693 2022 May 31. Pubmed Link

  • Voigt RM, Wang Z, Brown JM, Engen PA, Naqib A, Goetz CG, Hall DA, Metman LV, Shaikh M, Forsyth CB, Keshavarzian A. Gut microbial metabolites in Parkinson's disease: Association with lifestyle, disease characteristics, and treatment status. Neurobiol Dis. 2022 Aug. Epub PMID:35654277 2022 May 30. Pubmed Link

  • Manfready RA, Forsyth CB, Voigt RM, Hall DA, Goetz CG, Keshavarzian A. Gut-Brain Communication in Parkinson’s Disease: Enteroendocrine Regulation by GLP-1. Curr Neurol Neurosci Rep. 2022 Jul. Epub PMID:35633466 2022 May 28. Pubmed Link

  • Jackson A, Engen PA, Forsyth CB, Shaikh M, Naqib A, Wilber S, Frausto DM, Raeisi S, Green S, Desai Bradaric B, Persons AL, Voigt RM, Keshavarzian A. “Intestinal Barrier Dysfunction in the Absence of Systemic Inflammation Fails to Exacerbate Motor Dysfunction and Brain Pathology in a Mouse Model of Parkinson’s. Front Neurol. PMID: 35665034 2022 May Pubmed Link

  • Mohammadi Z, Bishehsari F, Masoudi S, Hekmatdoost A, Stewart DA, Eghtesad S, Sharafkhah M, Poustchi H, Merat S. Association between Sleeping Patterns and Mealtime with Gut Microbiome: A Pilot Study. Arch Iran Med. PMID:35943002 2022 May 1 Pubmed Link

  • Mohamed MF, Al-Khudari S, Cassini-Vieira P, Erra A, Bagabas R, Houser T, Stenson K, Bhayani M, Jelinek MJ, Bishehsari F, Kuzel TM, Shafikhani SH. Presence of CrkI-containing microvesicles in squamous cell carcinomas could have ramifications on tumor biology and cancer therapeutics. Sci Rep. PMID:35314778 2022 Mar 21 Pubmed Link

  • Bishehsari F, Adnan D, Deshmukh A, Khan SR, Rempert T, Dhana K, Mahdavinia M. Gastrointestinal Symptoms Predict the Outcomes From COVID-19 Infection.J Clin Gastroenterol. PMID:33780223 2022 Feb 1 Pubmed Link

  • Haque MR, Barlass U, Armstrong A, Shaikh M, Bishehsari F. Correction to: Novel role of the Mu‑opioid receptor in pancreatic cancer: potential link between opioid use and cancer progression. Mol Cell Biochem. PMID:35212863 2022 May Pubmed Link

  • Moossavi S, Arrieta MC, Sanati-Nezhad A, Bishehsari F. Gut-on-chip for ecological and causal human gut microbiome research. Trends Microbiol. 2022 Aug;30(8):710-721. doi: 10.1016/j.tim.2022.01.014. Epub PMID:35190251 2022 Feb 18. Pubmed Link

  • Haque MR, Barlass U, Armstrong A, Shaikh M, Bishehsari F. Novel role of the Mu-opioid receptor in pancreatic cancer: potential link between opioid use and cancer progression. Mol Cell Biochem. 2022 May;477(5):1339-1345. doi: 10.1007/s11010-022-04377-5. Epub PMID:35138511 2022 Feb 9.  Pubmed Link

  • Yao L, Davidson EA, Shaikh MW, Forsyth CB, Prenni JE, Broeckling CD. Quantitative analysis of short-chain fatty acids in human plasma and serum by GC-MS. Anal Bioanal Chem. 2022 Jun;414(15):4391-4399. doi: 10.1007/s00216-021-03785-8. Epub PMID:35091760 2022 Jan 29. Pubmed Link

  • Schugar et al, Armstrong A, Swanson GR, Keshavarzian A. Gut Microbe-Targeted Choline Trimethylamine Lyase Inhibition Improves Obesity Via Rewiring of Host Circadian Rhythms. Elife. PMID:35072627 2022 Jan 24 Pubmed Link

  • Adnan D, Trinh J, Bishehsari F. Inconsistent Eating Time is Associated with Obesity: A Prospective Study. EXCLI Journal 2022;21:300-306 – ISSN 1611-2156 Jan 14 2022 Pubmed Link

  • Swanson GR, Kochman N, Amin J, Chouhan V, Wesley Y, Engen PA, Naqib A, Tran L, Voigt RM, Forsyth CB, Green S, and Keshavarzian A.  Disrupted Circadian Rest-Activity Cycles in Inflammatory Bowel Disease are Associated with Aggressive Disease Phenotype, Subclinical Inflammation, and Dysbiosis. Front Med (Lausanne). PMID:35265631 2022 Feb 4 eCollection 2021. Pubmed Link

  • Chakradeo P, Rasmussen HE, Swanson GR, Swanson B, Fogg LF, Bishehsari F, Burgess HJ, Keshavarzian A.  Psychometric Testing of a Food Timing Questionnaire and Food Timing Screener Current Developments in Nutrition, 2021 Dec 16 eCollection PMID:35198845 2022 Feb. Pubmed Link

  • Szklany K, Engen PA, Naqib A, Green SJ, Keshavarzian A, Lopez Rincon A, Siebrand CJ, Diks MAP, van de Kaa M, Garssen J, Knippels LMJ, Kraneveld AD. Dietary Supplementation throughout Life with Non‐Digestible Oligosaccharides and/or n‐3 Poly‐Unsaturated Fatty Acids in Healthy Mice Modulates the Gut–Immune System–Brain AxisNutrients 2022,14, 173. Pubmed Link

  • Chellappa SL, Engen PA, Naqib A, Qian J, Vujovic N, Rahman N, Green SJ, Garaulet M, Keshavarzian A, Scheer FAJL. Proof-of-principle demonstration of endogenous circadian system and circadian misalignment effects on human oral microbiota. FASEB J. PMID:34861073 2022 Jan. Pubmed Link 

  • Wilson BM, Witkiewics BR, Voigt RM, Forysth CB, Keshavarzian A, Ko FC, Virdi AS, Sumner DR. Alcohol and Circadian Disruption Minimally Impact Bone Properties in Two Cohorts of Male Mice While Between-Cohort Differences Predominate: Association With Season of Birth? JBMR Plus. PMID: 35309863 2022 Jan 13. eCollection 2022 March Pubmed Link

  • Frausto DM, Forsyth CB, Keshavarzian A, Voigt RM. Dietary Regulation of Gut-Brain Axis in Alzheimer's Disease: Importance of Microbiota Metabolites. Front Neurosci. PMID:34867153 2021 Nov 19 Pubmed Link

  • Pal G, Ramirez V, Engen PA, Naqib A, Forsyth CB, Green SJ, Mahdavinia M, Batra PS, Tajudeen BA, Keshavarzian A. Deep nasal sinus cavity microbiota dysbiosis in Parkinson's disease. NPJ Parkinsons Dis. PMID:34880258 2021 Dec 8 Pubmed Link

  • Jungles K, Tran TDB, Botha M, Rasmussen HE, Teixeira-Reis V, Sodergren E, Gray C, Lunjani N, Hlela C, Basera W, Hobane L, Watkins A, Engen P, Mankahla A, Gaunt B, Facey-Thomas H, Landay A, Weinstock GM, Keshavarzian A, Levin ME, Mahdavinia M. Association of gut microbiota and environment in children with AD, comparison of three cohorts of children. . Clin Exp Allergy. 2022 Mar;52(3):447-450. doi: 10.1111/cea.14052. Epub PMID:3478677 2021 Nov 23. Pubmed Link

  • Moran MM, Wessman P, Rolfson O, Bohl DD, Kärrholm J, Keshavarzian A, Sumner DR.  The risk of revision following total hip arthroplasty in patients with inflammatory bowel disease, a registry based study. PLoS One. PMID:34735461 2021 Nov 4 Pubmed Link

  • Bhalla S, Sharma B, Smith D, Boley R, McCluskey C, Ilyas Y, Afshar M, Balk R, Karnik N, Keshavarzian A. Unhealthy alcohol use is an independent risk factor for increased COVID-19 disease severity: observational cross-sectional study. JMIR Public Health Surveill. PMID:34665758 2021 Oct 14. Pubmed Link

  • Giron LB, Dweep H, Yin X, Wang H, Damra M, Goldman AR, Gorman N, Palmer CS, Tang HY, Shaikh MW, Forsyth CB, Balk RA, Zilberstein NF, Liu Q, Kossenkov A, Keshavarzian A, Landay A, Abdel-Mohsen M. Corrigendum: Plasma Markers of Disrupted Gut Permeability in Severe COVID-19 Patients. Front Immunol. PMID:34671365 2021 Oct 4 Pubmed Link

  • Haque MR, Rempert TH, Al-Hilal TA, Wang C, Bhushan A, Bishehsari F. Organ-Chip Models: Opportunities for Precision Medicine in Pancreatic Cancer. Cancers (Basel). PMID:34503294 2021 Sep 6 Pubmed Link

  • Houser MC, Caudle WM, Chang J, Kannarkat GT, Yang Y, Kelly SD, Oliver D, Joers V, Shannon KM, Keshavarzian A, Tansey MG. Experimental colitis promotes sustained, sex-dependent, T-cell-associated neuroinflammation and parkinsonian neuropathology. Acta Neuropathol Commun. PMID:3441270 2021 Aug 19 Pubmed Link

  • Alsayid M, Khan MO, Adnan D, Rasmussen HE, Keshavarzian A, Bishehsari F. Behavioral circadian phenotypes are associated with the risk of elevated body mass index. Eat Weight Disord. 2022 May;27(4):1395-1403. doi: 10.1007/s40519-021-01276-4. Epub PMID:34355307  2021 Aug 5. Pubmed Link

  • Manfready R, Engen PA, Verhagen Metman L, Sanzo G, Goetz CG, Hall DA, Forsyth CB, Raeisi S, Voigt RM, Keshavarzian A. Attenuated Postprandial GLP-1 Response in Parkinson’s Disease. Front. Neurosci., 02 July 2021 Pubmed Link

  • Cantu-Jungles TM, Bulut N, Chambry E, Ruthes A, Iacomini M, Keshavarzian A, Johnson TA, Hamaker BR. Dietary Fiber Hierarchical Specificity: the Missing Link for Predictable and Strong Shifts in Gut Bacterial Communities. mBio. PMID:34182773 2021 Jun 29 Pubmed Link

  • Armstrong A, Haque MR, Mirbagheri S, Barlass U, Gilbert DZ, Amin J, Singh A, Naqib A, Bishehsari F. Multiplex Patient-Based Drug Response Assay in Pancreatic Ductal Adenocarcinoma. Biomedicines. PMID:34201419 2021 Jun 23 Pubmed Link

  • Giron LB, Dweep H, Yin X, Wang H, Damra M, Goldman AR, Gorman N, Palmer CS, Tang HY, Shaikh MW, Forsyth CB, Balk RA, Zilberstein NF, Liu Q, Kossenkov A, Keshavarzian A, Landay A, Abdel-Mohsen M.  Plasma Markers of Disrupted Gut Permeability in Severe COVID-19 Patients. Front Immunol. PMID:34177935 2021 Jun 9 Pubmed Link 

  • Amato KR, Arrieta MC, Azad MB, Bailey MT, Broussard JL, Bruggeling CE, Claud EC, Costello EK, Davenport ER, Dutilh BE, Swain Ewald HA, Ewald P, Hanlon EC, Julion W, Keshavarzian A, Maurice CF, Miller GE, Preidis GA, Segurel L, Singer B, Subramanian S, Zhao L, Kuzawa. The human gut microbiome and health inequities. PNAS June 22, 2021  Pubmed Link

  • E Adeniji OS, Giron LB, Purwar M, Zilberstein NF, Kulkarni AJ, Shaikh MW, Balk RA, Moy JN, Forsyth CB, Liu Q, Dweep H, Kossenkov A, Weiner DB, Keshavarzian A, Landay A, Abdel-Mohsen M.rratum for Adeniji et al., "COVID-19 Severity Is Associated with Differential Antibody Fc-Mediated Innate Immune Functions". mBio. PMID: 34098736 2021 Jun 8 Pubmed Link 

  • Tran L, Jochum SB, Shaikh M, Wilber S, Zhang L, Hayden DM, Forsyth CB, Voigt RM, Bishehsari F, Keshavarzian A, Swanson GR. Circadian misalignment by environmental light/dark shifting causes circadian disruption in colon. PLoS One. PMID:34086699 2021 Jun 4 Pubmed Link

  • Jiang AC, Buckingham L, Bishehsari F, Sutherland S, Ma K, Melson JE. Correlation of LINE-1 Hypomethylation With Size and Pathologic Extent of Dysplasia in Colorectal Tubular Adenomas. Clin Transl Gastroenterol. PMID:34060495 2021 Jun 1 Pubmed Link

  • Engen PA, Naqib A, Jennings C, Green SJ, Landay A, Keshavarzian A, Voigt RM. Nasopharyngeal Microbiota in SARS-CoV-2 Positive and Negative Patients. Biol Proced Online. PMID: 34058978 2021 Jun 1 Pubmed Link

  • Adeniji OS, Giron LB, Purwar M, Zilberstein NF, Kulkarni AJ, Shaikh MW, Balk RA, Moy JN, Forsyth CB, Liu Q, Dweep H, Kossenkov A, Weiner DB, Keshavarzian A, Landay A, Abdel-Mohsen M. COVID-19 Severity Is Associated with Differential Antibody Fc-Mediated Innate Immune Functions. mBio. PMID: 33879594 2021 Apr 20 Pubmed Link

  • Abbring S, Engen PA, Naqib A, Green SJ, Garssen J, Keshavarzian A, Van Esch BCAM. Raw Milk-Induced Protection against Food Allergic Symptoms in Mice Is Accompanied by Shifts in Microbial Community Structure. Int J Mol Sci. PMID:33810380  2021 Mar 26 Pubmed Link

  • Bishehsari F, Adnan D, Deshmukh A, Khan SR, Rempert T, Dhana K, Mahdavinia M. Gastrointestinal Symptoms Predict the Outcomes From COVID-19 Infection. J Clin Gastroenterol. PMID: 33780223 2021 Mar 12. Pubmed Link

  • Voigt RM, Raeisi S, Yang J, Leurgans S, Forsyth CB, Buchman AS, Bennett DA, Keshavarzian A. Systemic brain derived neurotrophic factor but not intestinal barrier integrity is associated with cognitive decline and incident Alzheimer's disease. PLoS One. PMID:33661922 2021 Mar 4 Pubmed Link

  • Mahdavinia M, Greenfield LR, Moore D, Botha M, Engen P, Gray C, Lunjani N, Hlela C, Basera W, Hobane L, Watkins A, Mankahla A, Gaunt B, Facey-Thomas H, Landay A, Keshavarzian A, Levin ME. House dust microbiota and atopic dermatitis; effect of urbanization. Pediatr Allergy Immunol. PMID:33570236 2021 Feb 11. Pubmed Link

  • Barlass U, Deshmukh A, Beck T, Bishehsari F. Opioid use as a potential risk factor for pancreatic cancer in the United States: An analysis of state and national level databases. PLoS One. PMID:33406096 2021 Jan 6  Pubmed Link

  • Voigt RM, Bishehsari F. The intestinal microbiota: determinants of resiliency? Lancet Healthy Longev. 2021 Jan;2(1):e2-e3. doi: 10.1016/S2666-7568(20)30048-9. Epub 2021 Jan 4. PMID: 36202140 Free article. No abstract available.